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2011-2013年柳州市部分HIV-1毒株gag基因测定及亚型分析

黎明强,  黄萍,  陈柳军,  余钧池,  刘鑫,  冯献湘

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文章导航 > 中华疾病控制杂志  > 2016 >  20(8): 781-784
黎明强, 黄萍, 陈柳军, 余钧池, 刘鑫, 冯献湘. 2011-2013年柳州市部分HIV-1毒株gag基因测定及亚型分析[J]. 中华疾病控制杂志, 2016, 20(8): 781-784. doi: 10.16462/j.cnki.zhjbkz.2016.08.007
引用本文: 黎明强, 黄萍, 陈柳军, 余钧池, 刘鑫, 冯献湘. 2011-2013年柳州市部分HIV-1毒株gag基因测定及亚型分析[J]. 中华疾病控制杂志, 2016, 20(8): 781-784. doi: 10.16462/j.cnki.zhjbkz.2016.08.007
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LI Ming-qiang, HUANG Ping, CHEN Liu-jun, YU Jun-chi, LIU Xin, FENG Xian-xiang. Study on distribution of partial HIV-1 strains subtypes in Liuzhou City from 2011 to 2013 by gene gag sequencing[J]. CHINESE JOURNAL OF DISEASE CONTROL & PREVENTION, 2016, 20(8): 781-784. doi: 10.16462/j.cnki.zhjbkz.2016.08.007
Citation: LI Ming-qiang, HUANG Ping, CHEN Liu-jun, YU Jun-chi, LIU Xin, FENG Xian-xiang. Study on distribution of partial HIV-1 strains subtypes in Liuzhou City from 2011 to 2013 by gene gag sequencing[J]. CHINESE JOURNAL OF DISEASE CONTROL & PREVENTION, 2016, 20(8): 781-784. doi: 10.16462/j.cnki.zhjbkz.2016.08.007
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2011-2013年柳州市部分HIV-1毒株gag基因测定及亚型分析

doi: 10.16462/j.cnki.zhjbkz.2016.08.007

  • 1. 柳州市疾病预防控制中心主任办公室, 广西 柳州 545007;

  • 2. 柳州市疾病预防控制中心微生物检验科, 广西 柳州 545007;

  • 3. 柳州市疾病预防控制中心性病与艾滋病防控科, 广西 柳州 545007

基金项目: 

广西科学技术厅立项课题（1140003A-44）

详细信息
    作者简介:

    黎明强(1961-),男,广西柳州人,主任医师,学士。主要研究方向:公共卫生管理和艾滋病防治;黄萍(1986-),女,壮族,广西柳州人,主管技师,硕士。主要研究方向:分子流行病学和功能基因组学。

  • 中图分类号: R512.91;R181

Study on distribution of partial HIV-1 strains subtypes in Liuzhou City from 2011 to 2013 by gene gag sequencing

  • 1. Dircetor's Office, Liuzhou Center for Disease Control and Prevention, Liuzhou 545007, China;

  • 2. Department of Microorganism Examination, Liuzhou Center for Disease Control and Prevention, Liuzhou 545007, China;

  • 3. Department of Sexually Transmitted Diseases and AIDS, Liuzhou Center for Disease Control and Prevention, Liuzhou 545007, China

    摘要
  • 摘要: 目的 了解2011-2013年柳州市人类免疫缺陷病毒1（human immunodeficiency virus 1, HIV-1）亚型分布、流行毒株情况。方法 从2011-2013年柳州市HIV-1毒株样本中采用单纯随机抽样方法抽取120株作为研究对象，将120份样本从血浆中抽提核酸RNA，扩增HIV-1 gag基因片段，送至北京六合华大基因科技股份有限公司测序。合格序列利用数据库分析亚型以及利用MEGA5构建系统进化树。结果 得到合格的gag基因片段98条序列。来自gag基因片段的序列分析重组流行毒株（circulate recombinant forms, CRFs）的重组亚型CRF01_AE占95.9%（94/98），异性传播比例为79.8%（75/94）；重组亚型CRF07_BC占4.1%（4/98）。样本1LZ022和1LZ032，1LZ025和3LZ029的bootstrap值分别为99.0%，100.0%，两两之间传播途径不同。结论 2011-2013年，柳州市HIV-1以重组亚型CRF01_AE为主。柳州市重组亚型CRF01_AE从吸毒人群向异性接触感染人群蔓延。利用系统进化关系结合传播途径，便于分析传染源，为艾滋病干预措施提供有力佐证。
    Abstract: Objective To understand human immunodeficiency virus 1(HIV-1) subtype distribution and pandemic strains in Liuzhou City from 2011 to 2013. Methods From 2011 to 2013, 120 samples which were randomly selected in HIV-1 infectors were extracted RNA nucleic acids from plasma, and were amplified gene gag fragment to be sequenced by BGI Technology Co. The qualified sequences were analyzed subtypes by using Los Alamos National Laboratory HIV database and built a phylogenetic tree by MEGA 5 software. Results The 98 sequences of gene gag were accomplished. The circulate recombinant forms's recombinant subtype CRF01_AE accounted for 95.9%(94/98), the heterosexual transmission accounted for 79.8% (75/94); and recombinant subtype CRF07_BC accounted for 4.1%(4/98). There were 1LZ022 and 1LZ032, 1LZ025 and 3LZ029 with high bootstrap value of 99.0% and 100.0% respectively between the two different transmission ways. Conclusions From 2011 to 2013, subtype of HIV-1 was mainly CRF01_AE which had spread from drug addicts to the heterosexual contact infections in Liuzhou City. Using phylogenetic tree combined with the transmission way, to locate the origin of infection and provide powerful evidence for HIV/AIDS intervention measures.
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    • 参考文献(19)
  • 李敬云. 艾滋病检测方法与应用 [M]. 北京:军事医学科学出版社, 2005:14-15.
    Lu L, Jia M, Ma Y, et al. The changing face of HIV in China [J]. Nature, 2008,455(7213):609-611.
    Murphy E, Korber B, Georges-Courbot MC, et al. Diversity of V3 region sequences of human immunodeficiency viruses type 1 from the central African Republic [J]. AIDS Res Hum Retroviruses, 1993,9(10):997-1006.
    Carr JK, Salminen MO, Koch C, et al. Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand [J]. J Virol, 1996,70(9):5935-5943.
    Gao F, Robertson DL, Morrison SG, et al. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin [J]. J Virol, 1996,70(10):7013-7029.
    Su L, Graf M, Zhang Y, et al. Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B') recombinant strain in China [J]. J Virol, 2000,74(23):11367-11376.
    Rodenburg CM, Li Y, Trask SA, et al. Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents [J]. AIDS Res Hum Retroviruses, 2001,17(2):161-168.
    McCutchan FE. Understanding the genetic diversity of HIV-1 [J]. AIDS, 2000,14(Suppl 3):S31-S44.
    Piyasirisilp S, McCutchan FE, Carr JK, et al. A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombination form AE and a novel BC recombinant [J]. J Virol, 2000,74(23): 11286-11295.
    Lang DM. Imperfect DNA mirror repeats in the gag gene of HIV-1 (HXB2) identify key functional domains and coincide with protein structural elements in each of the mature proteins [J]. Virol J, 2007,4(1):113
    Feng Y, He X, Hsi JH, et al. The rapidly expanding CRF01_AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s [J]. AIDS, 2013,27(11):1793-1802.
    Liao H, Tee KK, Hase S, et al. Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam [J]. Virology, 2009,391(1):51-56.
    Yu XF, Chen J, Shao Y, et al. Two subtypes of HIV-1 among injection-drug users in southern China [J]. Lancet, 1998,351(9111):1250.
    Zhao B, Han X, Dai D, et al. New trends of primary drug resistance among HIV type 1-infected men who have sex with men in Liaoning Province, China [J]. AIDS Res Hum Retroviruses, 2011,27(10):1047-1053.
    Zhang X, Li S, Li X, et al. Characterization of HIV-1 subtypes and viral antiretroviral drug resistance in men who have sex with men in Beijing, China [J]. AIDS, 2007,21(Suppl 8):S59-S65.
    邢辉,潘品良,苏玲,等. 1996-1998年中国流行的E亚型艾滋病病毒1型毒株的分子流行病学研究 [J]. 中国性病艾滋病防治, 2002,8(4):200-203.
    邢辉,梁浩,万卓越,等. 中国CRF01_AE亚型人类免疫缺陷病毒毒株的分子流行病学研究 [J]. 中华预防医学杂志, 2004,38(5): 300-304.
    Liu S, Xing H, He X, et al. Dynamic analysis of genetic diversity of gag and env regions of HIV-1 CRF07_BC recombinant in intravenous drug users in Xinjiang Uvghur Autonomous Region, China [J]. Arch Virol, 2008,153(7):1233-1240.
    文倩,周素娟,古海尔·肉孜,等. 新疆地区HIV-1感染者CRF07_BC流行毒株gag基因变异特性 [J]. 中华疾病控制杂志, 2015,19(12): 1187-1190.
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  • 收稿日期:  2016-04-26
  • 修回日期:  2016-06-05

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